miRBase entry: ggo-mir-7-2

Stem-loop ggo-mir-7-2

Accession

MI0002781

Description

Gorilla gorilla ggo-mir-7-2 precursor miRNA

Literature search

1 open access papers mention ggo-mir-7-2
(8 sentences)

Sequence

5217 reads, 525.0 reads per million, 4 experiments

cugcauacagaguggaccggcuggccccaucUGGAAGACUAGUGAUUUUGUUGUUgucuuacugcgcucaACAACAAAUCCCAGUCUGCCUAauggugccagccaucgca
(((....))).((((...(((((((.((((..((.(((((.(.(((((.(((((((............))))))))))))).))))).))..)))).))))))).)))).

Structure

cugcauacaga    acc       c    cU  A     A U     U       ucuua 
           gugg   ggcuggc ccau  GG AGACU G GAUUU GUUGUUg     c
           ||||   ||||||| ||||  || ||||| | ||||| |||||||      
           cgcu   ccgaccg ggua  CC UCUGA C CUAAA CAACAac     u
----------a    --a       u    AU  G     C -     -       ucgcg

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr15: 67211255-67211364 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-7-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-7-5p

Accession	MIMAT0002479
Description	Gorilla gorilla ggo-miR-7-5p mature miRNA
Sequence	32 - UGGAAGACUAGUGAUUUUGUUGUU - 55
Evidence	not_experimental

Mature ggo-miR-7-2-3p

Accession	MIMAT0061260
Description	Gorilla gorilla ggo-miR-7-2-3p mature miRNA
Sequence	71 - ACAACAAAUCCCAGUCUGCCUA - 92
Evidence	experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24