Stem-loop ptr-mir-105

Accession

MI0002749

Description

Pan troglodytes ptr-mir-105 precursor miRNA

Literature search

1 open access papers mention ptr-mir-105
(2 sentences)

Sequence

154 reads, 5.0 reads per million, 10 experiments

ugugcaucguggUCAAAUGCUCAGACUCCUGUGGUGgcugcuuaugcaCCACGGAUGUUUGAGCAUGUGCUauggugucua
...(((((((((.((.((((((((((..((((((((..........))))))))..)))))))))).)))))))))))...

Structure

ugu         U  A          UC        gcug 
   gcaucgugg CA AUGCUCAGAC  CUGUGGUG    c
   ||||||||| || ||||||||||  ||||||||     
   ugugguaUC GU UACGAGUUUG  GGCACCac    u
auc         -  G          UA        guau 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chrX: 152097904-152097984 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-105

Mature ptr-miR-105-5p

• Accession: MIMAT0002453
• Description: Pan troglodytes ptr-miR-105-5p mature miRNA
• Sequence: 13 - UCAAAUGCUCAGACUCCUGUGGUG - 36
• Evidence: not_experimental

Mature ptr-miR-105-3p

• Accession: MIMAT0052221
• Description: Pan troglodytes ptr-miR-105-3p mature miRNA
• Sequence: 49 - CCACGGAUGUUUGAGCAUGUGCU - 71
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24