Stem-loop ptr-mir-103-1

Accession

MI0002742

Description

Pan troglodytes ptr-mir-103-1 precursor miRNA

Literature search

1 open access papers mention ptr-mir-103-1
(1 sentences)

Sequence

2424669 reads, 21059.0 reads per million, 24 experiments

uacugcccucGGCUUCUUUACAGUGCUGCCUUGUugcauauggaucaAGCAGCAUUGUACAGGGCUAUGAaggcauug
...((((.((((((.((.(((((((((((.(((.(.(....).).)))))))))))))).))))))..)).))))...

Structure

uac    c  --    U  U           C   U g a 
   ugcc uc  GGCU CU UACAGUGCUGC UUG u c u
   |||| ||  |||| || ||||||||||| ||| | |  
   acgg AG  UCGG GA AUGUUACGACG Aac a g a
guu    a  UA    -  C           -   u g u 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr5: 169084206-169084283 [-]

Mature ptr-miR-103-1-5p

• Accession: MIMAT0052219
• Description: Pan troglodytes ptr-miR-103-1-5p mature miRNA
• Sequence: 11 - GGCUUCUUUACAGUGCUGCCUUGU - 34
• Evidence: not_experimental

Mature ptr-miR-103-3p

• Accession: MIMAT0002446
• Description: Pan troglodytes ptr-miR-103-3p mature miRNA
• Sequence: 48 - AGCAGCAUUGUACAGGGCUAUGA - 70
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24