Stem-loop ppy-mir-29b-2

Accession

MI0002734

Description

Pongo pygmaeus ppy-mir-29b-2 precursor miRNA

Sequence

cuucuggaagcugguuucacaugguggcuuagauuuuuccaucuuuguaucUAGCACCAUUUGAAAUCAGUguuuuaggag
(((((((((((((((((((.((((((.((.((((..............)))))))))))).)))))))))).)))))))))

Structure

         -          c      g  u    uuuucc 
cuucuggaa gcugguuuca auggug cu agau      a
||||||||| |||||||||| |||||| || ||||       
gaggauuuu UGACUAAAGU UACCAC GA Ucua      u
         g          U      -  -    uguuuc 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 42327544-42327624 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-29b-2

Mature ppy-miR-29b

• Accession: MIMAT0002434
• Description: Pongo pygmaeus ppy-miR-29b mature miRNA
• Sequence: 52 - UAGCACCAUUUGAAAUCAGU - 71
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24