Stem-loop ptr-mir-29b-1

Accession

MI0002727

Description

Pan troglodytes ptr-mir-29b-1 precursor miRNA

Literature search

1 open access papers mention ptr-mir-29b-1
(1 sentences)

Sequence

31256 reads, 281.0 reads per million, 24 experiments

cuucaggaaGCUGGUUUCAUAUGGUGGUUUAGAUuuaaauagugauugucUAGCACCAUUUGAAAUCAGUGUUcuuggggg
(((((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).))))))))).

Structure

-         -          U      GU      uuaaa 
 cuucaggaa GCUGGUUUCA AUGGUG  UUAGAU     u
 ||||||||| |||||||||| ||||||  ||||||     a
 gggguucUU UGACUAAAGU UACCAC  GAUcug     g
g         G          U      --      uuagu 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr7: 135425101-135425181 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-29b-1

Mature ptr-miR-29b-1-5p

• Accession: MIMAT0052217
• Description: Pan troglodytes ptr-miR-29b-1-5p mature miRNA
• Sequence: 10 - GCUGGUUUCAUAUGGUGGUUUAGAU - 34
• Evidence: not_experimental

Mature ptr-miR-29b-3p

• Accession: MIMAT0002435
• Description: Pan troglodytes ptr-miR-29b-3p mature miRNA
• Sequence: 51 - UAGCACCAUUUGAAAUCAGUGUU - 73
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24