Stem-loop ptr-mir-99a

Accession

MI0002703

Description

Pan troglodytes ptr-mir-99a precursor miRNA

Literature search

2 open access papers mention ptr-mir-99a
(5 sentences)

Sequence

81442 reads, 878.0 reads per million, 24 experiments

cccauuggcauaAACCCGUAGAUCCGAUCUUGUGgugaaguggaccgcaCAAGCUCGCUUCUAUGGGUCUGUgucagugug
..((((((((((.(((((((((..(((.((((((.((........)))))))).)))..))))))))).))))))))))..

Structure

cc          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUG ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacugUGU UGGGUAUCU  GCU GAACac gc   g
gu          C         UC   C      -  cag 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr21: 2985749-2985829 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-99a

Mature ptr-miR-99a-5p

• Accession: MIMAT0002411
• Description: Pan troglodytes ptr-miR-99a-5p mature miRNA
• Sequence: 13 - AACCCGUAGAUCCGAUCUUGUG - 34
• Evidence: not_experimental

Mature ptr-miR-99a-3p

• Accession: MIMAT0052214
• Description: Pan troglodytes ptr-miR-99a-3p mature miRNA
• Sequence: 50 - CAAGCUCGCUUCUAUGGGUCUGU - 72
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24