Stem-loop ptr-mir-33a

Accession

MI0002685

Description

Pan troglodytes ptr-mir-33a precursor miRNA

Literature search

3 open access papers mention ptr-mir-33a
(3 sentences)

Sequence

8029 reads, 72.0 reads per million, 24 experiments

cugugGUGCAUUGUAGUUGCAUUGCAUguucuggugguacccaugCAAUGUUUCCACAGUGCAUCAcag
((((((((((((((.(..((((((((((....(((...)))))))))))))..).))))))))))))))

Structure

              A UU          uucu   g 
cugugGUGCAUUGU G  GCAUUGCAUg    ggu  
|||||||||||||| |  ||||||||||    ||| g
gacACUACGUGACA C  UGUAACguac    cca  
              C UU          ----   u 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr22: 28560707-28560775 [+]

Mature ptr-miR-33a-5p

• Accession: MIMAT0002393
• Description: Pan troglodytes ptr-miR-33a-5p mature miRNA
• Sequence: 6 - GUGCAUUGUAGUUGCAUUGCAU - 27
• Evidence: not_experimental

Mature ptr-miR-33a-3p

• Accession: MIMAT0052211
• Description: Pan troglodytes ptr-miR-33a-3p mature miRNA
• Sequence: 46 - CAAUGUUUCCACAGUGCAUCA - 66
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24