Stem-loop ggo-mir-31

Accession

MI0002673

Description

Gorilla gorilla ggo-mir-31 precursor miRNA

Literature search

1 open access papers mention ggo-mir-31
(7 sentences)

Sequence

2533 reads, 193.0 reads per million, 4 experiments

ggagaggAGGCAAGAUGCUGGCAUAGCUGuugaacugggaaccUGCUAUGCCAACAUAUUGCCAUcuuucc
(((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).)))))))

Structure

       A     G   C         -U   gaa 
ggagagg GGCAA AUG UGGCAUAGC  Guu   c
||||||| ||||| ||| |||||||||  |||    
ccuuucU CCGUU UAC ACCGUAUCG  caa   u
       A     A   A         Uc   ggg 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr9: 28161927-28161997 [+]

Mature ggo-miR-31-5p

• Accession: MIMAT0002381
• Description: Gorilla gorilla ggo-miR-31-5p mature miRNA
• Sequence: 8 - AGGCAAGAUGCUGGCAUAGCUG - 29
• Evidence: not_experimental

Mature ggo-miR-31-3p

• Accession: MIMAT0061252
• Description: Gorilla gorilla ggo-miR-31-3p mature miRNA
• Sequence: 44 - UGCUAUGCCAACAUAUUGCCAU - 65
• Evidence: experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24