Stem-loop ptr-mir-31

Accession

MI0002672

Description

Pan troglodytes ptr-mir-31 precursor miRNA

Literature search

7 open access papers mention ptr-mir-31
(14 sentences)

Sequence

10517 reads, 208.0 reads per million, 24 experiments

ggagaggAGGCAAGAUGCUGGCAUAGCUGUUgaacugggaaccUGCUAUGCCAACAUAUUGCCAUcuuucc
(((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).)))))))

Structure

       A     G   C         -U   gaa 
ggagagg GGCAA AUG UGGCAUAGC  GUU   c
||||||| ||||| ||| |||||||||  |||    
ccuuucU CCGUU UAC ACCGUAUCG  caa   u
       A     A   A         Uc   ggg 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr9: 22036238-22036308 [-]

Mature ptr-miR-31-5p

• Accession: MIMAT0002380
• Description: Pan troglodytes ptr-miR-31-5p mature miRNA
• Sequence: 8 - AGGCAAGAUGCUGGCAUAGCUGUU - 31
• Evidence: not_experimental

Mature ptr-miR-31-3p

• Accession: MIMAT0052209
• Description: Pan troglodytes ptr-miR-31-3p mature miRNA
• Sequence: 44 - UGCUAUGCCAACAUAUUGCCAU - 65
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24