Stem-loop ptr-mir-29a

Accession

MI0002661

Description

Pan troglodytes ptr-mir-29a precursor miRNA

Literature search

8 open access papers mention ptr-mir-29a
(25 sentences)

Sequence

444184 reads, 3881.0 reads per million, 24 experiments

augACUGAUUUCUUUUGGUGUUCAGAgucaauauaauuuucUAGCACCAUCUGAAAUCGGUUAU
((((((((((((...(((((((.((((...........)))))))))))...))))))))))))

Structure

            UUU       C    ucaa 
augACUGAUUUC   UGGUGUU AGAg    u
||||||||||||   ||||||| ||||    a
UAUUGGCUAAAG   ACCACGA Ucuu    u
            UCU       -    uuaa 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr7: 135424388-135424451 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-29a

Mature ptr-miR-29a-5p

• Accession: MIMAT0052208
• Description: Pan troglodytes ptr-miR-29a-5p mature miRNA
• Sequence: 4 - ACUGAUUUCUUUUGGUGUUCAGA - 26
• Evidence: not_experimental

Mature ptr-miR-29a-3p

• Accession: MIMAT0002364
• Description: Pan troglodytes ptr-miR-29a-3p mature miRNA
• Sequence: 42 - UAGCACCAUCUGAAAUCGGUUAU - 64
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24