Stem-loop ptr-mir-28

Accession

MI0002650

Description

Pan troglodytes ptr-mir-28 precursor miRNA

Literature search

3 open access papers mention ptr-mir-28
(4 sentences)

Sequence

10405 reads, 94.0 reads per million, 24 experiments

gguccuugcccucAAGGAGCUCACAGUCUAUUGAguuaccuuucugacuuuccCACUAGAUUGUGAGCUCCUGGAgggcaggcacu
(((.(((((((((.((((((((((((((((.(((((((......)))))....)).)))))))))))))))).))))))))).)))

Structure

   c         A                U  ----     cc 
ggu cuugcccuc AGGAGCUCACAGUCUA UG    Aguua  u
||| ||||||||| |||||||||||||||| ||    |||||   
uca ggacgggAG UCCUCGAGUGUUAGAU AC    ucagu  u
   c         G                C  ccuu     cu 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr3: 192841648-192841733 [+]

Mature ptr-miR-28-5p

• Accession: MIMAT0002353
• Description: Pan troglodytes ptr-miR-28-5p mature miRNA
• Sequence: 14 - AAGGAGCUCACAGUCUAUUGA - 34
• Evidence: not_experimental

Mature ptr-miR-28-3p

• Accession: MIMAT0052207
• Description: Pan troglodytes ptr-miR-28-3p mature miRNA
• Sequence: 54 - CACUAGAUUGUGAGCUCCUGGA - 75
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24