Stem-loop ptr-mir-136

Accession

MI0002593

Description

Pan troglodytes ptr-mir-136 precursor miRNA

Literature search

2 open access papers mention ptr-mir-136
(4 sentences)

Sequence

1505 reads, 14.0 reads per million, 24 experiments

ugagcccucggaggACUCCAUUUGUUUUGAUGAUGGAUucuuaugcucCAUCAUCGUCUCAAAUGAGUCUUCagaggguucu
.((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).)))))))).

Structure

u        g        C     UUU          Uuc 
 gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
 |||||||| |||||||| |||||   ||||||||||   u
 cuugggag CUUCUGAG UAAAC   GCUACUACcu   a
u        a        -     UCU          cgu 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr14: 86129665-86129746 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ptr-mir-136

Mature ptr-miR-136-5p

• Accession: MIMAT0002292
• Description: Pan troglodytes ptr-miR-136-5p mature miRNA
• Sequence: 15 - ACUCCAUUUGUUUUGAUGAUGGAU - 38
• Evidence: not_experimental

Mature ptr-miR-136-3p

• Accession: MIMAT0052202
• Description: Pan troglodytes ptr-miR-136-3p mature miRNA
• Sequence: 49 - CAUCAUCGUCUCAAAUGAGUCUUC - 72
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24