Stem-loop ptr-mir-125b-2

Accession

MI0002578

Description

Pan troglodytes ptr-mir-125b-2 precursor miRNA

Sequence

52715 reads, 456.0 reads per million, 24 experiments

accagacuuuuccuagUCCCUGAGACCCUAACUUGUGAgguauuuuaguaacaucACAAGUCAGGCUCUUGGGACCUaggcggagggga
.((...((((.(((((((((.((((.(((.((((((((.((.........)).)))))))).))).)))))))).))))).)))).)).

Structure

a  aga    u     -    U    C   A        g  auu 
 cc   cuuu ccuag UCCC GAGA CCU ACUUGUGA gu   u
 ||   |||| ||||| |||| |||| ||| |||||||| ||   u
 gg   gagg ggaUC AGGG UUCU GGA UGAACAcu ca   a
a  --g    c     C    -    C   C        a  aug 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr21: 3035946-3036034 [+]

Mature ptr-miR-125b-2-5p

• Accession: MIMAT0060775
• Description: Pan troglodytes ptr-miR-125b-2-5p mature miRNA
• Sequence: 17 - UCCCUGAGACCCUAACUUGUGA - 38
• Evidence: not_experimental

Mature ptr-miR-125b-2-3p

• Accession: MIMAT0052190
• Description: Pan troglodytes ptr-miR-125b-2-3p mature miRNA
• Sequence: 56 - ACAAGUCAGGCUCUUGGGACCU - 77
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24