Stem-loop ptr-mir-9-2

Accession

MI0002569

Description

Pan troglodytes ptr-mir-9-2 precursor miRNA

Literature search

1 open access papers mention ptr-mir-9-2
(1 sentences)

Sequence

167659 reads, 1285.0 reads per million, 23 experiments

ggaagcgaguuguuaUCUUUGGUUAUCUAGCUGUAUGAguguauuggucuucAUAAAGCUAGAUAACCGAAAGUaaaaacuccuuca
.((((.(((((.((((.(((((((((((((((.((((((.(.......))))))).))))))))))))))).)))).))))))))).

Structure

g    c     g    C               G      u ua 
 gaag gaguu uuaU UUUGGUUAUCUAGCU UAUGAg g  u
 |||| ||||| |||| ||||||||||||||| |||||| |  u
 cuuc cucaa aaUG AAGCCAAUAGAUCGA AUAcuu c  g
a    -     a    A               A      - ug 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr5: 26977880-26977966 [+]

Mature ptr-miR-9-5p

• Accession: MIMAT0002275
• Description: Pan troglodytes ptr-miR-9-5p mature miRNA
• Sequence: 16 - UCUUUGGUUAUCUAGCUGUAUGA - 38
• Evidence: not_experimental

Mature ptr-miR-9-3p

• Accession: MIMAT0052200
• Description: Pan troglodytes ptr-miR-9-3p mature miRNA
• Sequence: 53 - AUAAAGCUAGAUAACCGAAAGU - 74
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24