Stem-loop ggo-mir-135a

Accession

MI0002542

Description

Gorilla gorilla ggo-mir-135a precursor miRNA

Sequence

457 reads, 84.0 reads per million, 2 experiments

agauaaauucacucuagugcuuUAUGGCUUUUUAUUCCUAUGUGAuaguaauaaagucucaUGUAGGGAUGGAAGCCAUGAaauacauugugaaaaauca
.(((...(((((....(((.((((((((((((.((((((((((((.(.(.....).).)))))))))))))))))))))))).)))...)))))..))).

Structure

a   aaa     ucua   c            U            u g a 
 gau   uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    ||| |||||||||||| |||||||||||| | | u
 cua   aagug    cau aAGUACCGAAGG UAGGGAUGUacu u a a
a   -aa     -uua   a            -            c g a 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr12: 97301642-97301741 [+]

Mature ggo-miR-135a-5p

• Accession: MIMAT0002253
• Description: Gorilla gorilla ggo-miR-135a-5p mature miRNA
• Sequence: 23 - UAUGGCUUUUUAUUCCUAUGUGA - 45
• Evidence: not_experimental

Mature ggo-miR-135a-3p

• Accession: MIMAT0061241
• Description: Gorilla gorilla ggo-miR-135a-3p mature miRNA
• Sequence: 62 - UGUAGGGAUGGAAGCCAUGA - 81
• Evidence: experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24