Accession
MI0002532
Description
Pan troglodytes
ptr-mir-133a-1 precursor miRNA
Sequence
18364
reads,
139.0
reads per million, 21 experiments
acaaugcuuugcuagAGCUGGUAAAAUGGAACCAAAUcgccucuucaauggaUUUGGUCCCCUUCAACCAGCUGUagcuaugcauuga
.((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))).
.((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))).
Structure
a uuu g AA U A gccuc caaugc gcua AGCUGGU AA GG ACCAAAUc u |||||| |||| ||||||| || || |||||||| guuacg cgaU UCGACCA UU CC UGGUUUag u a uau G AC C C guaac
Annotation confidence
High
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.
Genome context
chr18: 18838061-18838148 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-133a-1
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ptr-miR-133a-5p
| Accession | MIMAT0052193 |
| Description | Pan troglodytes ptr-miR-133a-5p mature miRNA |
| Sequence | 16 - AGCUGGUAAAAUGGAACCAAAU - 37 |
| Evidence | not_experimental |
Mature ptr-miR-133a-3p
| Accession | MIMAT0002243 |
| Description | Pan troglodytes ptr-miR-133a-3p mature miRNA |
| Sequence | 53 - UUUGGUCCCCUUCAACCAGCUGU - 75 |
| Evidence | not_experimental |
References
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