Stem-loop ptr-mir-125b-1

Accession

MI0002513

Description

Pan troglodytes ptr-mir-125b-1 precursor miRNA

Sequence

94309 reads, 819.0 reads per million, 24 experiments

ugcgcuccucucagUCCCUGAGACCCUAACUUGUGAUguuuaccguuuaaauccACGGGUUAGGCUCUUGGGAGCUgcgagucgugcu
.((((..(((.((((.(((((((.(((((((((((..(((((.....))))).))))))))))).))))))).)))).)))..)))).

Structure

u    uc   u    C       C           AU     c 
 gcgc  cuc cagU CCUGAGA CCUAACUUGUG  guuua c
 ||||  ||| |||| ||||||| |||||||||||  ||||| g
 cgug  gag gUCG GGGUUCU GGAUUGGGCAc  uaaau u
u    cu   c    A       C           -c     u 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr11: 122594973-122595060 [-]

Mature ptr-miR-125b-1-5p

• Accession: MIMAT0060774
• Description: Pan troglodytes ptr-miR-125b-1-5p mature miRNA
• Sequence: 15 - UCCCUGAGACCCUAACUUGUGAU - 37
• Evidence: not_experimental

Mature ptr-miR-125b-1-3p

• Accession: MIMAT0052189
• Description: Pan troglodytes ptr-miR-125b-1-3p mature miRNA
• Sequence: 55 - ACGGGUUAGGCUCUUGGGAGCU - 76
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24