Stem-loop ptr-mir-30b

Accession

MI0002503

Description

Pan troglodytes ptr-mir-30b precursor miRNA

Literature search

2 open access papers mention ptr-mir-30b
(2 sentences)

Sequence

8011 reads, 71.0 reads per million, 24 experiments

accaaguuucaguucaUGUAAACAUCCUACACUCAGCUguaauacauggauuggCUGGGAGGUGGAUGUUUACUUcagcugacuugga
.(((((..((((((...((((((((((.((.((((((((............))))))))..))))))))))))...))))))))))).

Structure

a     uu      caU          U  -A        uaaua 
 ccaag  ucaguu   GUAAACAUCC AC  CUCAGCUg     c
 |||||  ||||||   |||||||||| ||  ||||||||      
 gguuc  agucga   CAUUUGUAGG UG  GGGUCggu     a
a     --      cUU          -  GA        uaggu 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr8: 137272665-137272752 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-30b

Mature ptr-miR-30b-5p

• Accession: MIMAT0002214
• Description: Pan troglodytes ptr-miR-30b-5p mature miRNA
• Sequence: 17 - UGUAAACAUCCUACACUCAGCU - 38
• Evidence: not_experimental

Mature ptr-miR-30b-3p

• Accession: MIMAT0052188
• Description: Pan troglodytes ptr-miR-30b-3p mature miRNA
• Sequence: 55 - CUGGGAGGUGGAUGUUUACUU - 75
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24