Stem-loop ptr-mir-23b

Accession

MI0002499

Description

Pan troglodytes ptr-mir-23b precursor miRNA

Literature search

3 open access papers mention ptr-mir-23b
(9 sentences)

Sequence

90040 reads, 763.0 reads per million, 24 experiments

cucaggugcucuggcugcuUGGGUUCCUGGCAUGCUGAUUUgugacuuaagauuaaaAUCACAUUGCCAGGGAUUACCAcgcaaccacgaccuuggc
.(((((.(.(((((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).))).)))))))).

Structure

c     u c  -   c   u   --          -  C      gugacu 
 ucagg g uc ugg ugc UGG  GUUCCUGGCA UG UGAUUU      u
 ||||| | || ||| ||| |||  |||||||||| || ||||||       
 gguuc c ag acc acg ACC  UAGGGACCGU AC ACUAaa      a
c     - -  c   a   c   AU          U  -      auuaga 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr9: 72783734-72783830 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-mir-23b

Mature ptr-miR-23b-5p

• Accession: MIMAT0052187
• Description: Pan troglodytes ptr-miR-23b-5p mature miRNA
• Sequence: 20 - UGGGUUCCUGGCAUGCUGAUUU - 41
• Evidence: not_experimental

Mature ptr-miR-23b-3p

• Accession: MIMAT0002210
• Description: Pan troglodytes ptr-miR-23b-3p mature miRNA
• Sequence: 58 - AUCACAUUGCCAGGGAUUACCA - 79
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24