Accession
MI0002478
Description
Kaposi sarcoma-associated herpesvirus
kshv-mir-K12-8 precursor miRNA
Sequence
cgcgcACUCCCUCACUAACGCCCCGCUuuugucuguuggaagcagCUAGGCGCGACUGAGAGAGCAcgcg
((((..(((.((((.(..((((..(((....(((...)))...)))..))))..).)))).)))..))))
((((..(((.((((.(..((((..(((....(((...)))...)))..))))..).)))).)))..))))
Structure
cA C C AA CC uuug g
cgcg CUC CUCA U CGCC GCU ucu
|||| ||| |||| | |||| ||| ||| u
gcgc GAG GAGU A GCGG Cga agg
AC A C GC AU -cga u
Annotation confidence
Low
Do you think this miRNA is real?
Comments
Cai et al. define the likely miRNA primary transcripts in [4].
Genome context
KSU75698: 119943-120012 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from kshv-mir-K12-8
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature kshv-miR-K12-8-5p
| Accession | MIMAT0015216 |
| Description | Kaposi sarcoma-associated herpesvirus kshv-miR-K12-8-5p mature miRNA |
| Sequence | 6 - ACUCCCUCACUAACGCCCCGCU - 27 |
| Evidence |
experimental
Illumina [6], SOLiD [7] |
Mature kshv-miR-K12-8-3p
| Accession | MIMAT0002186 |
| Description | Kaposi sarcoma-associated herpesvirus kshv-miR-K12-8-3p mature miRNA |
| Sequence | 46 - CUAGGCGCGACUGAGAGAGCA - 66 |
| Evidence |
experimental
cloned [1-3,5], Illumina [6], SOLiD [7] |
References
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