Stem-loop kshv-mir-K12-10b

Accession

MI0002473

Description

Kaposi sarcoma-associated herpesvirus kshv-mir-K12-10b precursor miRNA

Sequence

cuggaggcuuggggcgauaccaccacucguuugucuguuggcgauUGGUGUUGUCCCCCCGAGUGGCcag
((((..((((((((.((((.(((((.(((((........))))).))))).)))).))))))))..))))

Structure

    ag        c    c     c     ugu 
cugg  gcuugggg gaua cacca ucguu   c
||||  |||||||| |||| ||||| |||||    
gacC  UGAGCCCC CUGU GUGGU agcgg   u
    GG        C    U     u     uug 

Annotation confidence Not enough data

Comments

Cai et al. define the likely miRNA primary transcripts in [3].

Genome context

Unknown

Mature kshv-miR-K12-10b

• Accession: MIMAT0002180
• Description: Kaposi sarcoma-associated herpesvirus kshv-miR-K12-10b mature miRNA
• Sequence: 46 - UGGUGUUGUCCCCCCGAGUGGC - 67
• Evidence: experimental ; cloned [1-2,4], Illumina [5], SOLiD [6]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 15800047
   Kaposi's sarcoma-associated herpesvirus expresses an array of viral microRNAs in latently infected cells
   "Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR"
   "Proc Natl Acad Sci U S A (2005) 102:5570-5575


3. PubMed ID: 15782219
   Identification of microRNAs of the herpesvirus family
   "Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA, van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G, Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T"
   "Nat Methods (2005) 2:269-276


4. PubMed ID: 16474131
   Transcriptional origin of Kaposi's sarcoma-associated herpesvirus microRNAs
   "Cai X, Cullen BR"
   "J Virol (2006) 80:2234-2242


5. PubMed ID: 19889781
   In-depth analysis of Kaposi's sarcoma-associated herpesvirus microRNA expression provides insights into the mammalian microRNA-processing machinery
   "Umbach JL, Cullen BR"
   "J Virol (2010) 84:695-703


6. PubMed ID: 20566670
   Small RNA profiling reveals antisense transcription throughout the KSHV genome and novel small RNAs
   "Lin YT, Kincaid RP, Arasappan D, Dowd SE, Hunicke-Smith SP, Sullivan CS"
   "RNA (2010) 16:1540-1558