Stem-loop ptc-MIR482a

Accession

MI0002397

Description

Populus trichocarpa ptc-MIR482a precursor miRNA

Literature search

10 open access papers mention ptc-MIR482a
(140 sentences)

Sequence

75261 reads, 1270.0 reads per million, 9 experiments

gaguccuagcaagucuuuggAGAUGGGAGAGUAUGCAAGAAGgaaaaauucaugauuuaauauuccuUCUUGCCUACUCCUCCCAUUCCaucugcuuucugcgacuc
(((((.(((.((((...(((((.((((((((((.((((((((((((((((...)))))....))))))))))).)))).)))))))))))...)))).))).)))))

Structure

     c   c    cuu     A      -    U           ----     c 
gaguc uag aagu   uggAG UGGGAG AGUA GCAAGAAGgaa    aaauu  
||||| ||| ||||   ||||| |||||| |||| |||||||||||    ||||| a
cucag guc uucg   aCCUU ACCCUC UCAU CGUUCUuccuu    uuuag  
     c   u    ucu     -      C    C           auaa     u 

Annotation confidence High

Genome context

CM000344.2: 8028049-8028155 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR482a

Mature ptc-miR482a-5p

• Accession: MIMAT0060819
• Description: Populus trichocarpa ptc-miR482a-5p mature miRNA
• Sequence: 21 - AGAUGGGAGAGUAUGCAAGAAG - 42
• Evidence: experimental ; Illumina [1]

Mature ptc-miR482a-3p

• Accession: MIMAT0006785
• Description: Populus trichocarpa ptc-miR482a-3p mature miRNA
• Sequence: 68 - UCUUGCCUACUCCUCCCAUUCC - 89
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203


2. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151