Stem-loop ptc-MIR480

Accession

MI0002390

Description

Populus trichocarpa ptc-MIR480 precursor miRNA

Sequence

uaauauguuugggguugauccuuguuuaguuauaauagacccacaccugacugcuuagaauuauuuguuaucgcauauccgacuacauuauugacguugaaaaacagagaACUACUACAUCAUUGACGUUGAACcauaaa
...((((..(((((((.....((((......))))..))))).)).((((....)))).......(((..(((......)))..)))...((((((((((.......((.....))......))))))))))..))))..

Structure

uaa    uuugggguugauccuuguuuaguuauaauagacccacaccugacugcuuagaauuauuuguuaucgcauauccgacuacauua          aaaacag  a 
   uaug                                                                                   uugacguuga       ag A
   ||||                                                                                   ||||||||||       || C
   auac                                                                                   AGUUGCAGUU       UC U
-aa    ---------------------------------------------------------------------------------CA          -ACUACA  A 

Annotation confidence Not enough data

Genome context

CM000350.2: 7250847-7250986 [-]

Mature ptc-miR480

• Accession: MIMAT0002096
• Description: Populus trichocarpa ptc-miR480 mature miRNA
• Sequence: 111 - ACUACUACAUCAUUGACGUUGAAC - 134
• Evidence: experimental ; cloned [1], PCR [1]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203