Stem-loop ptc-MIR478q

Accession

MI0002385

Description

Populus trichocarpa ptc-MIR478q precursor miRNA

Gene family

MIPF0000052; MIR478

Literature search

1 open access papers mention ptc-MIR478q
(2 sentences)

Sequence

ucuccuuuuuagggauaaacguuaauguuuuagacgagucuccuaaauuuuagggacuaaugucauuuuUAACGUGUCUCCUAUUUUUAGGGAcc
..(((((..(((((((..(((((((.......((((((((.(((((...)))))))))..))))....)))))))))).)))).....)))))..

Structure

uc     ---uu    -   aa       uguuuua    --    u     a 
  uccuu     uagg gau  acguuaa       gacg  aguc ccuaa  
  |||||     |||| |||  |||||||       ||||  |||| ||||| u
  AGGGA     AUCC CUG  UGCAAUu       cugu  ucag ggauu  
cc     UUUUU    U   --       ---uuua    aa    -     u 

Annotation confidence Not enough data

Genome context

CM000344.2: 11781607-11781701 [+]

Mature ptc-miR478q

• Accession: MIMAT0002091
• Description: Populus trichocarpa ptc-miR478q mature miRNA
• Sequence: 70 - UAACGUGUCUCCUAUUUUUAGGGA - 93
• Evidence: not_experimental

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203