Stem-loop ptc-MIR478m

Accession

MI0002381

Description

Populus trichocarpa ptc-MIR478m precursor miRNA

Literature search

1 open access papers mention ptc-MIR478m
(2 sentences)

Sequence

agucuccuaauuuuuagggacugauguuauuuuUAACGUGUCUCCUAUUUUUAGGGAcc
.(((.(((((....(((((((..((((((....))))))))).))))...)))))))).

Structure

a   u     uuuu    -   ug      u 
 guc ccuaa    uagg gac  auguua u
 ||| |||||    |||| |||  ||||||  
 cAG GGAUU    AUCC CUG  UGCAAU u
c   -     -UUU    U   --      u 

Annotation confidence Low

Genome context

Unknown

Mature ptc-miR478m

• Accession: MIMAT0002087
• Description: Populus trichocarpa ptc-miR478m mature miRNA
• Sequence: 34 - UAACGUGUCUCCUAUUUUUAGGGA - 57
• Evidence: not_experimental

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203