Stem-loop ptc-MIR478h

Accession

MI0002376

Description

Populus trichocarpa ptc-MIR478h precursor miRNA

Gene family

MIPF0000052; MIR478

Literature search

1 open access papers mention ptc-MIR478h
(2 sentences)

Sequence

ucuccuuuuuagggacaaacgucaauauuuuagacgagucuccuaauuuuuagggacuggugucauuuuUAACGUGUCUCCUAUUUUUAGGGAcc
..(((((..(((((((..((((.((......(.((.((((.(((((...))))))))).)).).....)).))))))).)))).....)))))..

Structure

uc     ---uu    -   aa    c  uauuuu g  g    u     u 
  uccuu     uagg gac  acgu aa      a ac aguc ccuaa  
  |||||     |||| |||  |||| ||      | || |||| ||||| u
  AGGGA     AUCC CUG  UGCA Uu      u ug ucag ggauu  
cc     UUUUU    U   --    A  -uuuac g  g    -     u 

Annotation confidence Not enough data

Genome context

CM000337.2: 48219698-48219792 [-]

Mature ptc-miR478h

• Accession: MIMAT0002082
• Description: Populus trichocarpa ptc-miR478h mature miRNA
• Sequence: 70 - UAACGUGUCUCCUAUUUUUAGGGA - 93
• Evidence: not_experimental

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203