Stem-loop ptc-MIR478e

Accession

MI0002374

Description

Populus trichocarpa ptc-MIR478e precursor miRNA

Gene family

MIPF0000052; MIR478

Literature search

1 open access papers mention ptc-MIR478e
(2 sentences)

Sequence

gagucuucuaucuuuaagaacggacaucauauuucucgugaauggucuaauUGACGAGUCUUCUAUUUUUAGGGAuagacacuag
.(((..((((((((((((((.(((..........(((((.(((......))).)))))...))).)))))))))))))).)))..

Structure

-g   cu              c   caucauauuu     g   gg 
  agu  ucuaucuuuaagaa gga          cucgu aau  u
  |||  |||||||||||||| |||          ||||| |||   
  uca  agauAGGGAUUUUU UCU          GAGCA Uua  c
ga   -c              A   -------UCU     G   au 

Annotation confidence Not enough data

Genome context

CM000338.2: 18713054-18713138 [+]

Mature ptc-miR478e

• Accession: MIMAT0002080
• Description: Populus trichocarpa ptc-miR478e mature miRNA
• Sequence: 52 - UGACGAGUCUUCUAUUUUUAGGGA - 75
• Evidence: not_experimental

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203