Stem-loop ptc-MIR478d

Accession

MI0002373

Description

Populus trichocarpa ptc-MIR478d precursor miRNA

Gene family

MIPF0000052; MIR478

Literature search

1 open access papers mention ptc-MIR478d
(2 sentences)

Sequence

agccuaaucgacgugucuccuacuuuuaggguuggacguuaacuuuuuuaugaauagccuaguUGACAUGUCUUCUAUUUUUAGUAAccaagauug
.........((((((((..((.......((((((..(((..........)))..))))))))..))))))))........................

Structure

---------------agccuaauc        uc  acuuuua      ga   uaac 
                        gacguguc  cu       ggguug  cgu    u
                        ||||||||  ||       ||||||  |||     
                        CUGUACAG  ga       uccgau  gua    u
guuagaaccAAUGAUUUUUAUCUU        Uu  -------      aa   uuuu 

Annotation confidence Not enough data

Genome context

CM000339.2: 13828473-13828568 [+]

Mature ptc-miR478d

• Accession: MIMAT0002079
• Description: Populus trichocarpa ptc-miR478d mature miRNA
• Sequence: 64 - UGACAUGUCUUCUAUUUUUAGUAA - 87
• Evidence: experimental ; cloned [1], PCR [1]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203