Stem-loop ptc-MIR478c

Accession

MI0002372

Description

Populus trichocarpa ptc-MIR478c precursor miRNA

Gene family

MIPF0000052; MIR478

Literature search

1 open access papers mention ptc-MIR478c
(2 sentences)

Sequence

ucuccuuuuuaggguuaaaugucaauauuuuagacgaguuuucuauuuuuagggucugguguuauuuuuUGACGUGUCUUCUAUUUUUAGGGAcc
..(((((..(((((....(((((((......(.((.((..(((((....))))).)).)).)......)))))))...))))).....)))))..

Structure

uc     ---uu     uuaa       uauuuu g  g  uu     u 
  uccuu     uaggg    augucaa      a ac ag  uucua u
  |||||     |||||    |||||||      | || ||  |||||  
  AGGGA     AUCUU    UGCAGUu      u ug uc  gggau u
cc     UUUUU     -CUG       uuuuau g  g  -u     u 

Annotation confidence Not enough data

Genome context

CM000341.2: 9861343-9861437 [-]

Mature ptc-miR478c

• Accession: MIMAT0002078
• Description: Populus trichocarpa ptc-miR478c mature miRNA
• Sequence: 70 - UGACGUGUCUUCUAUUUUUAGGGA - 93
• Evidence: experimental ; cloned [1], PCR [1]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203