Stem-loop ptc-MIR478a

Accession

MI0002370

Description

Populus trichocarpa ptc-MIR478a precursor miRNA

Literature search

1 open access papers mention ptc-MIR478a
(1 sentences)

Sequence

118 reads, 2.0 reads per million, 9 experiments

cucccuuuuaggguuaaaacgucaacauuUUAGACGAGUCUCUUAUUUUUAGGgacugguguuauuuuuUGACGUGUCUUCUAUUUUUAGGGAcug
.(((((..(((((.....(((((((......(.((.(((((((.......))))))).)).)......)))))))...))))).....)))))...

Structure

--c     ---uu     uuaaa       cauuUU G  G       UA 
   ucccu     uaggg     acgucaa      A AC AGUCUCU  U
   |||||     |||||     |||||||      | || |||||||  U
   AGGGA     AUCUU     UGCAGUu      u ug ucagGGA  U
guc     UUUUU     --CUG       uuuuau g  g       UU 

Annotation confidence Low

Genome context

CM000348.2: 7133508-7133603 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR478a

Mature ptc-miR478a-5p

• Accession: MIMAT0055651
• Description: Populus trichocarpa ptc-miR478a-5p mature miRNA
• Sequence: 30 - UUAGACGAGUCUCUUAUUUUUAGG - 53
• Evidence: experimental ; unknown

Mature ptc-miR478a-3p

• Accession: MIMAT0002076
• Description: Populus trichocarpa ptc-miR478a-3p mature miRNA
• Sequence: 70 - UGACGUGUCUUCUAUUUUUAGGGA - 93
• Evidence: experimental ; cloned [1], PCR [1]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203