Stem-loop ptc-MIR477b

Accession

MI0002369

Description

Populus trichocarpa ptc-MIR477b precursor miRNA

Literature search

1 open access papers mention ptc-MIR477b
(1 sentences)

Sequence

6440 reads, 114.0 reads per million, 9 experiments

caAUCUCCCUCAGAGGCUUCCAAuaucucaguuuauaguaauugcuucaaauaaugagaauguuGGAUGCCUUUGGGUGAGAUUG
(((((((.(((((((((.((((((((((((((((..(((....)))..))))..)))).)))))))).))))))))).)))))))

Structure

       C         U        -    --    au   a 
caAUCUC CUCAGAGGC UCCAAuau cuca  guuu  agu a
||||||| ||||||||| |||||||| ||||  ||||  |||  
GUUAGAG GGGUUUCCG AGGuugua gagu  uaaa  ucg u
       U         U        a    aa    cu   u 

Annotation confidence High

Genome context

CM000348.2: 11674627-11674711 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ptc-MIR477b

Mature ptc-miR477b-5p

• Accession: MIMAT0002075
• Description: Populus trichocarpa ptc-miR477b-5p mature miRNA
• Sequence: 3 - AUCUCCCUCAGAGGCUUCCAA - 23
• Evidence: experimental ; cloned [1], Northern [1]

Mature ptc-miR477b-3p

• Accession: MIMAT0055650
• Description: Populus trichocarpa ptc-miR477b-3p mature miRNA
• Sequence: 65 - GGAUGCCUUUGGGUGAGAUUG - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203