Stem-loop ptc-MIR477a

Accession

MI0002368

Description

Populus trichocarpa ptc-MIR477a precursor miRNA

Literature search

1 open access papers mention ptc-MIR477a
(1 sentences)

Sequence

7520 reads, 132.0 reads per million, 9 experiments

caAUCUCCCUCAGAGGCUUCCAAUaucucaguuuauaguaauugcuucaaauaacgagaauGUUGGAUGCCUUUGGGGGAGAUug
(((((((((((((((((.(((((((((((.((((..(((....)))..))))...))).)))))))).)))))))))))))))))

Structure

                 U        -   --a    au   a 
caAUCUCCCUCAGAGGC UCCAAUau cuc   guuu  agu a
||||||||||||||||| |||||||| |||   ||||  |||  
guUAGAGGGGGUUUCCG AGGUUGua gag   uaaa  ucg u
                 U        a   caa    cu   u 

Annotation confidence Medium

Genome context

CM000348.2: 11669997-11670081 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ptc-MIR477a

Mature ptc-miR477a-5p

• Accession: MIMAT0002074
• Description: Populus trichocarpa ptc-miR477a-5p mature miRNA
• Sequence: 3 - AUCUCCCUCAGAGGCUUCCAAU - 24
• Evidence: experimental ; cloned [1], Northern [1], miRNAseq [2]

Mature ptc-miR477a-3p

• Accession: MIMAT0022918
• Description: Populus trichocarpa ptc-miR477a-3p mature miRNA
• Sequence: 62 - GUUGGAUGCCUUUGGGGGAGAU - 83
• Evidence: experimental ; miRNAseq [2]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203


2. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034