Stem-loop ptc-MIR476b

Accession

MI0002366

Description

Populus trichocarpa ptc-MIR476b precursor miRNA

Literature search

3 open access papers mention ptc-MIR476b
(9 sentences)

Sequence

4434 reads, 77.0 reads per million, 9 experiments

gcUAGUAAUUCUUCUUUGCAAAAucauuaauuauccuagcucuaauuacuauaauuaauggcuUUGCAAAGAUAGAUUUACUAGCUaaaucuu
((((((((.(((((((((((((.(((((((((((..(((......)))..))))))))))).)))))))))).))).))))))))........

Structure

--------        U   -          A           cc   cu 
        gcUAGUAA UCU UCUUUGCAAA ucauuaauuau  uag  c
        |||||||| ||| |||||||||| |||||||||||  |||   
        CGAUCAUU AGA AGAAACGUUu gguaauuaaua  auu  u
uucuaaaU        U   U          c           uc   aa 

Annotation confidence High

Genome context

CM000339.2: 16524691-16524783 [-]

Mature ptc-miR476b-5p

• Accession: MIMAT0002072
• Description: Populus trichocarpa ptc-miR476b-5p mature miRNA
• Sequence: 3 - UAGUAAUUCUUCUUUGCAAAA - 23
• Evidence: not_experimental

Mature ptc-miR476b-3p

• Accession: MIMAT0055649
• Description: Populus trichocarpa ptc-miR476b-3p mature miRNA
• Sequence: 64 - UUGCAAAGAUAGAUUUACUAGCU - 86
• Evidence: experimental ; unknown

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203