Stem-loop ptc-MIR475d

Accession

MI0002364

Description

Populus trichocarpa ptc-MIR475d precursor miRNA

Gene family

MIPF0000145; MIR475

Literature search

2 open access papers mention ptc-MIR475d
(10 sentences)

Sequence

auaacauccugaucAAUGGCCAUUGUAAGAGUAGAaggauccaugaagcaaaacauugacuccugauauuccacucUUACAGAGUCCAUUGAUUAAGauguua
.(((((((.((((((((((.(.((((((((((.((((((((.(((........))).)).)))).....)).)))))))))).).)))))))))).)))))))

Structure

a       c          C A          A  -----    -  c   aag 
 uaacauc ugaucAAUGG C UUGUAAGAGU GA     agga uc aug   c
 ||||||| |||||||||| | |||||||||| ||     |||| || |||    
 auuguaG AUUAGUUACC G GACAUUcuca cu     uccu ag uac   a
-       A          U A          c  uauag    c  u   aaa 

Annotation confidence Not enough data

Genome context

CM000344.2: 7964193-7964295 [-]

Mature ptc-miR475d-3p

• Accession: MIMAT0002070
• Description: Populus trichocarpa ptc-miR475d-3p mature miRNA
• Sequence: 77 - UUACAGAGUCCAUUGAUUAAG - 97
• Evidence: experimental ; miRNAseq [2]

Mature ptc-miR475d-5p

• Accession: MIMAT0022917
• Description: Populus trichocarpa ptc-miR475d-5p mature miRNA
• Sequence: 15 - AAUGGCCAUUGUAAGAGUAGA - 35
• Evidence: experimental ; miRNAseq [2]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203


2. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034