Stem-loop ptc-MIR475c

Accession

MI0002363

Description

Populus trichocarpa ptc-MIR475c precursor miRNA

Literature search

2 open access papers mention ptc-MIR475c
(10 sentences)

Sequence

22274 reads, 350.0 reads per million, 9 experiments

uaacaucuugaacAAUGGCCAUUGUAAGAGUAagugguccaugagucaauaacucucuuugcagaaaugcaugacaaagcauugacuccuauuucacccUUACAAUGUCCAUUGAUUAAGagguu
.(((.((((((.((((((.(((((((((.((((((((.....((((((((.........((((....)))).........)))))))))))))).)).))))))))).)))))).)))))).)))

Structure

u   a      a      C         A  -      uccau        aacucucuu    g 
 aac ucuuga cAAUGG CAUUGUAAG GU Aagugg     gagucaau         ugca a
 ||| |||||| |||||| ||||||||| || ||||||     ||||||||         ||||  
 uug aGAAUU GUUACC GUAACAUUc ca uuuauc     cucaguua         acgu a
-   g      A      U         c  c      -----        cgaaacagu    a 

Annotation confidence Medium

Genome context

CM000346.2: 12908656-12908780 [+]

Mature ptc-miR475c-5p

• Accession: MIMAT0055647
• Description: Populus trichocarpa ptc-miR475c-5p mature miRNA
• Sequence: 14 - AAUGGCCAUUGUAAGAGUA - 32
• Evidence: experimental ; unknown

Mature ptc-miR475c-3p

• Accession: MIMAT0002069
• Description: Populus trichocarpa ptc-miR475c-3p mature miRNA
• Sequence: 100 - UUACAAUGUCCAUUGAUUAAG - 120
• Evidence: not_experimental

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203