Stem-loop ptc-MIR474a

Accession

MI0002358

Description

Populus trichocarpa ptc-MIR474a precursor miRNA

Gene family

MIPF0000215; MIR474

Literature search

1 open access papers mention ptc-MIR474a
(1 sentences)

Sequence

ucCAAAAGUUGCUGGGUUUGGCUGGGcaggcggacccaaugcuauuggguucagcaggacccaacacuucuuuccuucucuucuaucaccagcacccuuugaaa
..((((.(.((((((...(((.(((((..(((((((((((...))))))))).))..).))))...................)))...)))))).).))))...

Structure

-uc    A U      GUU   ------------------C    - ag  -         g 
   CAAA G UGCUGG   UGG                   UGGG c  gc ggacccaau  
   |||| | ||||||   |||                   |||| |  || ||||||||| c
   guuu c acgacc   auc                   accc g  cg cuuggguua  
aaa    c c      acu   uucucuuccuuucuucaca    a ga  a         u 

Annotation confidence Not enough data

Genome context

CM000342.2: 22284795-22284898 [+]

Mature ptc-miR474a

• Accession: MIMAT0002064
• Description: Populus trichocarpa ptc-miR474a mature miRNA
• Sequence: 3 - CAAAAGUUGCUGGGUUUGGCUGGG - 26
• Evidence: experimental ; cloned [1], PCR [1]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203