Stem-loop ptc-MIR472b

Accession

MI0002355

Description

Populus trichocarpa ptc-MIR472b precursor miRNA

Literature search

5 open access papers mention ptc-MIR472b
(16 sentences)

Sequence

104295 reads, 1800.0 reads per million, 9 experiments

uuacugGAUGGGUGAGUGGGGAAGAUAacuaagcucuguuuguuaUUUUCCCAACUCCACCCAUCCCauag
.....((((((((((((.(((((((((((.((((...))))))))))))))).))).))))))))).....

Structure

uuacu         -   G           u    u 
     gGAUGGGUG AGU GGGAAGAUAac aagc  
     ||||||||| ||| ||||||||||| |||| c
     CCUACCCAC UCA CCCUUUUauug uuug  
gauaC         C   A           -    u 

Annotation confidence Medium

Genome context

CM000349.2: 103712-103782 [+]

Mature ptc-miR472b-5p

• Accession: MIMAT0055646
• Description: Populus trichocarpa ptc-miR472b-5p mature miRNA
• Sequence: 7 - GAUGGGUGAGUGGGGAAGAUA - 27
• Evidence: experimental ; unknown

Mature ptc-miR472b-3p

• Accession: MIMAT0002061
• Description: Populus trichocarpa ptc-miR472b-3p mature miRNA
• Sequence: 46 - UUUUCCCAACUCCACCCAUCCC - 67
• Evidence: not_experimental

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203