Stem-loop ptc-MIR472a

Accession

MI0002354

Description

Populus trichocarpa ptc-MIR472a precursor miRNA

Literature search

5 open access papers mention ptc-MIR472a
(13 sentences)

Sequence

180660 reads, 3095.0 reads per million, 9 experiments

uUAUCGGGUGGGUGAGCGGGGAagauaacuuugguuuuugagauaguacuuguuaUUUUCCCUACUCCACCCAUCCCauag
.(((.(((((((((((.((((((((((((...(((.((......)).))).)))))))))))).)).))))))))).))).

Structure

u   C         -  C            uuu   u  ug 
 UAU GGGUGGGUG AG GGGGAagauaac   ggu uu  a
 ||| ||||||||| || ||||||||||||   ||| ||   
 aua CCUACCCAC UC UCCCUUUUauug   uca ga  g
g   C         C  A            --u   u  ua 

Annotation confidence Low

Genome context

CM000341.2: 119630-119710 [+]

Mature ptc-miR472a-5p

• Accession: MIMAT0055645
• Description: Populus trichocarpa ptc-miR472a-5p mature miRNA
• Sequence: 2 - UAUCGGGUGGGUGAGCGGGGA - 22
• Evidence: experimental ; unknown

Mature ptc-miR472a-3p

• Accession: MIMAT0002060
• Description: Populus trichocarpa ptc-miR472a-3p mature miRNA
• Sequence: 56 - UUUUCCCUACUCCACCCAUCCC - 77
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203