Stem-loop sbi-MIR156e

Accession

MI0001856

Description

Sorghum bicolor sbi-MIR156e precursor miRNA

Literature search

8 open access papers mention sbi-MIR156e
(23 sentences)

Sequence

1788097 reads, 8910.0 reads per million, 50 experiments

cgauuaggcccugaagagauUGACAGAAGAGAGCGAGCACccggcgcggcggccggcauggagcgcaugccguccccgccgcguGCUCGCUUCUCUUUCUGUCAGCcucucucucguccuggg
...(((((.(..((((((.(((((((((((((((((((((.(((((.((.(((.((((((.....)))))))))))))))).)))))))).)))).))))))))).)))).))..).))))).

Structure

cga     c cu  -    a         -    -        c     c  c   c      g 
   uuagg c  ga agag uUGACAGAA GAGA GCGAGCAC cggcg gg ggc ggcaug a
   ||||| |  || |||| ||||||||| |||| |||||||| ||||| || ||| |||||| g
   ggucc g  cu ucuc GACUGUCUU CUCU CGCUCGug gccgc cc cug ccguac c
--g     u cu  c    C         U    U        c     -  -   -      g 

Annotation confidence High

Genome context

chr10: 55313871-55313993 [+]

Mature sbi-miR156e-5p

• Accession: MIMAT0001758
• Description: Sorghum bicolor sbi-miR156e-5p mature miRNA
• Sequence: 21 - UGACAGAAGAGAGCGAGCAC - 40
• Evidence: not_experimental

Mature sbi-miR156e-3p

• Accession: MIMAT0056394
• Description: Sorghum bicolor sbi-miR156e-3p mature miRNA
• Sequence: 85 - GCUCGCUUCUCUUUCUGUCAGC - 106
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13