Stem-loop sbi-MIR171f

Accession

MI0001854

Description

Sorghum bicolor sbi-MIR171f precursor miRNA

Literature search

2 open access papers mention sbi-MIR171f
(3 sentences)

Sequence

41047 reads, 2103.0 reads per million, 50 experiments

ugagagaauaagacgacauggCGUGAUGUUGUUUCGGCUCAUGcauauccuucuugaguguaucaucaggaaagaggcgAUGAGCCGAACCAAUAUCACUcauguauucuucauucaua
.....((((((((..((((((.(((((((((.((((((((((((...((.(((((((........))))))).)).)).)))))))))).)))))))))))))))..)))).))))...

Structure

ugaga    -    cg      C         U          -  aua  c       gug 
     gaau aaga  acaugg GUGAUGUUG UUCGGCUCAU Gc   uc uucuuga   u
     |||| ||||  |||||| ||||||||| |||||||||| ||   || |||||||    
     cuua uucu  uguacU CACUAUAAC AAGCCGAGUA cg   ag aaggacu   a
--aua    c    ua      -         C          g  --g  a       acu 

Annotation confidence High

Genome context

chr4: 62745972-62746090 [-]

Mature sbi-miR171f-5p

• Accession: MIMAT0056392
• Description: Sorghum bicolor sbi-miR171f-5p mature miRNA
• Sequence: 22 - CGUGAUGUUGUUUCGGCUCAUG - 43
• Evidence: experimental ; unknown

Mature sbi-miR171f-3p

• Accession: MIMAT0001756
• Description: Sorghum bicolor sbi-miR171f-3p mature miRNA
• Sequence: 80 - AUGAGCCGAACCAAUAUCACU - 100
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13