Stem-loop sbi-MIR399i

Accession

MI0001850

Description

Sorghum bicolor sbi-MIR399i precursor miRNA

Literature search

3 open access papers mention sbi-MIR399i
(5 sentences)

Sequence

14003 reads, 264.0 reads per million, 50 experiments

augccuaagcuguccaguuucaGGGCUUCUCUUUCUUGGCAGGgagcaugagaagccauagcucugcucuguucugcccucUGCCAAAGGAGAGUUGCCCUGuaacaggacucagcuuaug
.....((((((((((.(((.((((((..((((((.(((((((((.(((.(((.((....(((...))))).)))))).))))))))).))))))..)))))).))).))))..))))))..

Structure

augcc      --    a   u      UU      C         a   u   a  ccau   u 
     uaagcu  gucc guu caGGGC  CUCUUU UUGGCAGGg gca gag ag    agc  
     ||||||  |||| ||| ||||||  |||||| ||||||||| ||| ||| ||    ||| c
     auucga  cagg caa GUCCCG  GAGAGG AACCGUcuc cgu cuu uc    ucg  
---gu      cu    a   u      UU      A         c   -   g  ----   u 

Annotation confidence High

Genome context

chr6: 54075299-54075419 [+]

Mature sbi-miR399i-5p

• Accession: MIMAT0056388
• Description: Sorghum bicolor sbi-miR399i-5p mature miRNA
• Sequence: 23 - GGGCUUCUCUUUCUUGGCAGG - 43
• Evidence: experimental ; unknown

Mature sbi-miR399i-3p

• Accession: MIMAT0001752
• Description: Sorghum bicolor sbi-miR399i-3p mature miRNA
• Sequence: 82 - UGCCAAAGGAGAGUUGCCCUG - 102
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13