Stem-loop sbi-MIR399h

Accession

MI0001849

Description

Sorghum bicolor sbi-MIR399h precursor miRNA

Literature search

3 open access papers mention sbi-MIR399h
(5 sentences)

Sequence

4453 reads, 86.0 reads per million, 43 experiments

aguguucaggguaagaaucacaGUGCGGUUCUCCUCUGGCAUGgaggccaacauagcaggcauuggagaaugcacagcgcuaucgccaucccUGCCAAAGGAGAAUUGCCCUGccauucgguauaacccugg
......((((((..((((..(((.(((((((((((.(((((.((((((....(((((.((((((....))))).)...))))).))).))).))))).))))))))))).)))..))))......)))))).

Structure

aguguu      ----aa    ca   U           C     U   -   caac     --a -     g 
      cagggu      gaau  caG GCGGUUCUCCU UGGCA Gga ggc    auagc   g gcauu g
      ||||||      ||||  ||| ||||||||||| ||||| ||| |||    |||||   | |||||  
      guccca      cuua  GUC CGUUAAGAGGA ACCGU ccu ccg    uaucg   c cguaa a
-----g      auaugg    cc   C           A     c   a   ---c     cga a     g 

Annotation confidence High

Genome context

chr10: 48189611-48189742 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sbi-MIR399h

Mature sbi-miR399h-5p

• Accession: MIMAT0056387
• Description: Sorghum bicolor sbi-miR399h-5p mature miRNA
• Sequence: 23 - GUGCGGUUCUCCUCUGGCAUG - 43
• Evidence: experimental ; unknown

Mature sbi-miR399h-3p

• Accession: MIMAT0001751
• Description: Sorghum bicolor sbi-miR399h-3p mature miRNA
• Sequence: 93 - UGCCAAAGGAGAAUUGCCCUG - 113
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13