Stem-loop zma-MIR167g

Accession

MI0001821

Description

Zea mays zma-MIR167g precursor miRNA

Literature search

29 open access papers mention zma-MIR167g
(127 sentences)

Sequence

30883 reads, 15005.0 reads per million, 115 experiments

aguggugcaccacgagUUGGUGAAGCUGCCAGCAUGAUCUGguuaugaugguggugguauauguaagauggauguaaucuauacuacuaccggccccugucacucucucucucucccccgucccugacugucauauauggaucgacgaauccaagaugagaggggaagggagagagagagaggguaauuaaugagcaccagGACCAGGUCAUGCUGUAGUUUCAUCugcugguggccgcacau
....((((.((((.(((.(((((((((((.((((((((((((((.((..(((((((((((.....((((.......)))))))))))))))(((....)))((((((((((((((.(((.((((...((.((((...(((((......)))))..)))).)))))).))).)))))))))))))).............)).))))))))))))))))))))))))).))).))))..))))..

Structure

agug    -a    g   U           C              a  augguggugguauauguaagauggauguaaucuauacuacuaccggccccuguc              c   g    uga  g    aua     cg 
    gugc  ccac agU GGUGAAGCUGC AGCAUGAUCUGguu ug                                                      acucucucucucuc ccc uccc   cu ucau   uggau  a
    ||||  |||| ||| ||||||||||| |||||||||||||| ||                                                      |||||||||||||| ||| ||||   || ||||   |||||   
    cacg  ggug ucg CUACUUUGAUG UCGUACUGGACCAG ac                                                      ugggagagagagag ggg aggg   ga agua   accua  c
--ua    cc    g   u           -              g  -----------------------------------------cacgaguaauuaa              a   a    ---  g    -ga     ag 

Annotation confidence Medium

Genome context

3: 120492486-120492728 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR167g

Mature zma-miR167g-5p

• Accession: MIMAT0001723
• Description: Zea mays zma-miR167g-5p mature miRNA
• Sequence: 17 - UUGGUGAAGCUGCCAGCAUGAUCUG - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR167g-3p

• Accession: MIMAT0015188
• Description: Zea mays zma-miR167g-3p mature miRNA
• Sequence: 202 - GACCAGGUCAUGCUGUAGUUUCAUC - 226
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13