Stem-loop zma-MIR396a

Accession

MI0001801

Description

Zea mays zma-MIR396a precursor miRNA

Literature search

28 open access papers mention zma-MIR396a
(106 sentences)

Sequence

2505 reads, 3436.0 reads per million, 108 experiments

acauggcccuccuugcCGUCUUCCACAGCUUUCUUGAACUGcaugccgccggcugguggaugcugcgcgcuugaauuccggucgaucccaagaggCGCAGUUCAAUAAAGCUGUGGGAAAcugcagagagaggccac
...((((((((.((((.((.((((((((((((.(((((((((((.(((((....))))))))).((((.((((...((.....))...))))..))))))))))).)))))))))))).)).)))).))).))))).

Structure

aca     -   c    C  C            C       Gcaugccgccggcugguggaugcu    -g    aau  c 
   uggcc cuc uugc GU UUCCACAGCUUU UUGAACU                        gcgc  cuug   uc g
   ||||| ||| |||| || |||||||||||| |||||||                        ||||  ||||   || g
   accgg gag gacg cA AGGGUGUCGAAA AACUUGA                        CGCg  gaac   ag u
--c     a   a    u  A            U       ------------------------    ga    ccu  c 

Annotation confidence Low

Genome context

4: 178367641-178367777 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR396a

Mature zma-miR396a-5p

• Accession: MIMAT0001703
• Description: Zea mays zma-miR396a-5p mature miRNA
• Sequence: 17 - CGUCUUCCACAGCUUUCUUGAACUG - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR396a-3p

• Accession: MIMAT0015168
• Description: Zea mays zma-miR396a-3p mature miRNA
• Sequence: 96 - CGCAGUUCAAUAAAGCUGUGGGAAA - 120
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13