Stem-loop zma-MIR396b

Accession

MI0001800

Description

Zea mays zma-MIR396b precursor miRNA

Literature search

28 open access papers mention zma-MIR396b
(89 sentences)

Sequence

1245 reads, 1338.0 reads per million, 82 experiments

agauggccuucuuuguGAUCUUCCACAGCUUUCUUGAACUGcaucucucagaggagcggcagcuucaacuccuccacccgcaucagcaggugcauGCAGUUCAAUAAAGCUGUGGGAAACugcagagagaggccag
...((((((((((((((...((((((((((((.(((((((((((......((((((..(......)..))))))((((.((....)).)))).))))))))))).))))))))))))...)))))))).)))))).

Structure

aga      -        AUC            C           -------------cucuca      cg ca 
   uggccu ucuuuguG   UUCCACAGCUUU UUGAACUGcau                   gaggag  g  g
   |||||| ||||||||   |||||||||||| |||||||||||                   ||||||  |   
   accgga agagacgu   AGGGUGUCGAAA AACUUGACGua                   cuccuc  c  c
--g      g        CAA            U           cguggacgacuacgcccac      aa uu 

Annotation confidence Low

Genome context

9: 17005043-17005178 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR396b

Mature zma-miR396b-5p

• Accession: MIMAT0001702
• Description: Zea mays zma-miR396b-5p mature miRNA
• Sequence: 17 - GAUCUUCCACAGCUUUCUUGAACUG - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR396b-3p

• Accession: MIMAT0015167
• Description: Zea mays zma-miR396b-3p mature miRNA
• Sequence: 96 - GCAGUUCAAUAAAGCUGUGGGAAAC - 120
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13