Stem-loop gma-MIR398a

Accession

MI0001787

Description

Glycine max gma-MIR398a precursor miRNA

Literature search

19 open access papers mention gma-MIR398a
(83 sentences)

Sequence

2007201 reads, 2451.0 reads per million, 177 experiments

cucggaGGAGUGAAUCUGAGAACACAAggcugguuugcacugcuauaucaucuauugguauaaggugaauuuacuuUGUGUUCUCAGGUCACCCCUUugagccaaccuguugacau
((((((((.((((.(((((((((((((((..(((((((.((..(((((((.....))))))))))))))))..))))))))))))))))))).))))))))...............

Structure

---------------        A    A               cu       a  gc       u 
               cucggaGG GUGA UCUGAGAACACAAgg  gguuugc cu  uauauca c
               |||||||| |||| |||||||||||||||  ||||||| ||  ||||||| u
               gaguUUCC CACU GGACUCUUGUGUuuc  uuaagug ga  auauggu a
uacaguuguccaacc        C    -               au       -  --       u 

Annotation confidence High

Genome context

chr1: 7214749-7214864 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR398a

Mature gma-miR398a-5p

• Accession: MIMAT0054012
• Description: Glycine max gma-miR398a-5p mature miRNA
• Sequence: 7 - GGAGUGAAUCUGAGAACACAA - 27
• Evidence: experimental ; unknown

Mature gma-miR398a-3p

• Accession: MIMAT0001689
• Description: Glycine max gma-miR398a-3p mature miRNA
• Sequence: 77 - UGUGUUCUCAGGUCACCCCUU - 97
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13