Stem-loop gma-MIR319b

Accession

MI0001783

Description

Glycine max gma-MIR319b precursor miRNA

Literature search

17 open access papers mention gma-MIR319b
(46 sentences)

Sequence

18346054 reads, 56816.0 reads per million, 178 experiments

uaaguccuaagcgacgguaagAGAGCUUUCUUCAGUCCACUUaugggugacaauaagauuucaauuagcugccgacucauucauccaaaugcugagugaaagcgaagaaagauacucagcaaaugagugaaugaugcgggagacaaauugauucuuaaguuuccuguacUUGGACUGAAGGGAGCUCCCUUuuucuuuugaaucuucu
...(((......)))...(((.(((((((((((((((((..((((((.(((..(((((..((((((.(((.(((..((((((((.((..(((((((((..............)))))))))..)).))))))))..))).)).).)))))).))))).))).))))))..))))))))))))))))).))).(((....)))......

Structure

uaaguccuaagcgacggu   A                 CU      u   aa     uu      a -  g   ac        c  aa         aaagcg 
                  aag GAGCUUUCUUCAGUCCA  Uauggg gac  uaaga  ucaauu g cu ccg  ucauucau ca  ugcugagug      a
                  ||| |||||||||||||||||  |||||| |||  |||||  |||||| | || |||  |||||||| ||  |||||||||       
                  UUC CUCGAGGGAAGUCAGGU  augucc uug  auucu  aguuaa c ga ggc  aguaagug gu  acgacucau      a
-ucuucuaaguuuucuuu   C                 Uc      u   -a     -u      a a  g   gu        a  aa         agaaag 

Annotation confidence High

Genome context

chr8: 1650575-1650782 [-]

Mature gma-miR319b-5p

• Accession: MIMAT0054010
• Description: Glycine max gma-miR319b-5p mature miRNA
• Sequence: 22 - AGAGCUUUCUUCAGUCCACUU - 42
• Evidence: experimental ; unknown

Mature gma-miR319b-3p

• Accession: MIMAT0001685
• Description: Glycine max gma-miR319b-3p mature miRNA
• Sequence: 170 - UUGGACUGAAGGGAGCUCCCUU - 191
• Evidence: experimental ; 454 [1]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160