Stem-loop gma-MIR167b

Accession

MI0001778

Description

Glycine max gma-MIR167b precursor miRNA

Literature search

27 open access papers mention gma-MIR167b
(188 sentences)

Sequence

6066796 reads, 13244.0 reads per million, 178 experiments

aagggucacaaaggaaaaagUGAAGCUGCCAGCAUGAUCUAgcuuugguuagugggagcgagagagugcuaacccucacuagGUCAUGCUGUGCUAGCCUCACUccuuccuauuuggagac
....(((.((((((((..(((((.((((((((((((((((((....(((((((....((......)))))))))....))))))))))))).)).))).)))))..)))))..)))..)))

Structure

aagg   -a   --     aa     A   -  -             cuuu       ggga  ga 
    guc  caa  aggaa  agUGA GCU GC CAGCAUGAUCUAg    gguuagu    gc  g
    |||  |||  |||||  ||||| ||| || |||||||||||||    |||||||    ||   
    cag  guu  uccuu  UCACU CGA CG GUCGUACUGgauc    ccaaucg    ug  a
----   ag   ua     cc     C   U  U             acuc       ----  ag 

Annotation confidence High

Genome context

chr2: 14838068-14838188 [-]

Mature gma-miR167b-5p

• Accession: MIMAT0001680
• Description: Glycine max gma-miR167b-5p mature miRNA
• Sequence: 21 - UGAAGCUGCCAGCAUGAUCUA - 41
• Evidence: experimental ; 454 [1]

Mature gma-miR167b-3p

• Accession: MIMAT0054006
• Description: Glycine max gma-miR167b-3p mature miRNA
• Sequence: 83 - GUCAUGCUGUGCUAGCCUCACU - 104
• Evidence: experimental ; unknown

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160