miRBase entry: rno-mir-365

Stem-loop rno-mir-365


Accession
MI0001656
Description
Rattus norvegicus rno-mir-365 precursor miRNA
Gene family
MIPF0000061; mir-365

Literature search
13 open access papers mention rno-mir-365
(248 sentences)

Sequence

28037 reads, 67 reads per million, 480 experiments
acagcaagaaaaauGAGGGACUUUCAGGGGCagcuguguuuccugacucagucaUAAUGCCCCUAAAAAUCCUUAUuguucuugca
...(((((((.((((((((..(((.(((((((((((.(((....))).)))).....))))))).))).)))))))).))))))).

Structure
aca       a        AC   C       -----    u   u 
   gcaagaa aauGAGGG  UUU AGGGGCa     gcug guu c
   ||||||| ||||||||  ||| |||||||     |||| |||  
   cguucuu uUAUUCCU  AAA UCCCCGU     ugac cag c
--a       g        -A   A       AAUac    u   u 


Annotation confidence High
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Comments
Xie et al. [1] refer to this sequence by the internal identifier MIR245. The sequence is unrelated to C. elegans mir-245 (MIR:MI0000321).

Genome context
chr10: 67079796-67079881 [+]

Database links

Mature rno-miR-365-5p

Accession MIMAT0017184
Description Rattus norvegicus rno-miR-365-5p mature miRNA
Sequence 15 - GAGGGACUUUCAGGGGC - 31
Evidence experimental
SOLiD [2]

Mature rno-miR-365-3p

Accession MIMAT0001549
Description Rattus norvegicus rno-miR-365-3p mature miRNA
Sequence 55 - UAAUGCCCCUAAAAAUCCUUAU - 76
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 15735639
    Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
    "Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M"
    "Nature (2005) 434:338-345