Stem-loop sbi-MIR171e

Accession

MI0001570

Description

Sorghum bicolor sbi-MIR171e precursor miRNA

Literature search

2 open access papers mention sbi-MIR171e
(3 sentences)

Sequence

57055 reads, 2531.0 reads per million, 50 experiments

aggaggaagaagacgacauggCGUGGUAUUGUUUCGGCUCAUGUccuucuugcuucgagucugucgucggauuuuggaugugauGUGAGCCGAACCAAUAUCACUcauguauucuucauucuga
...((((.(((((..((((((.(((((((((.((((((((((((((.(((...(((((........)))))....))).).))))))))))))).)))))))))))))))..))))).))))..

Structure

agg    a     cg      C         U             - u   -ugc     guc 
   agga gaaga  acaugg GUGGUAUUG UUCGGCUCAUGUc c ucu    uucga   u
   |||| |||||  |||||| ||||||||| ||||||||||||| | |||    |||||    
   ucuu cuucu  uguacU CACUAUAAC AAGCCGAGUGuag g agg    aggcu   g
-ag    a     ua      -         C             u u   uuuu     gcu 

Annotation confidence High

Genome context

chr6: 53651339-53651462 [+]

Mature sbi-miR171e-5p

• Accession: MIMAT0056384
• Description: Sorghum bicolor sbi-miR171e-5p mature miRNA
• Sequence: 22 - CGUGGUAUUGUUUCGGCUCAUGU - 44
• Evidence: experimental ; unknown

Mature sbi-miR171e-3p

• Accession: MIMAT0001466
• Description: Sorghum bicolor sbi-miR171e-3p mature miRNA
• Sequence: 85 - GUGAGCCGAACCAAUAUCACU - 105
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13